Publications

  • Ma L, Rathgeb A, Mubarak H, Tran M, Fei B. Unsupervised super-resolution reconstruction of hyperspectral histology images for whole-slide imaging. Journal of biomedical optics. 2022 May 1;27(5):056502-.

    Ma_2022_JBO_SuperRes_Reconstruction_WSI [PubMed] [PDF] [DOI]
  • Young J, Shahedi M, Dormer JD, Johnson B, Gahan J, Fei B. A low-cost PVC-based dual-modality kidney phantom. In Medical Imaging 2022: Image-Guided Procedures, Robotic Interventions, and Modeling 2022 Apr 4 (Vol. 12034, pp. 639-647). SPIE.

    Fei_2022_SPIE_Young_Kidney_Phantom [PubMed] [PDF] [DOI]
  • Zhou X, Ma L, Mubarak HK, Little JV, Chen AY, Myers LL, Sumer BD, Fei B. Automatic detection of head and neck squamous cell carcinoma on pathologic slides using polarized hyperspectral imaging and deep learning. In Medical Imaging 2022: Digital and Computational Pathology 2022 Apr 4 (Vol. 12039, pp. 91-100). SPIE.

    Fei_2022_SPIE_Ximing_PHSI_Histology [PubMed] [PDF] [DOI]
  • Chaudhary U, Leitch K, Chhabra A, Kohli A, Fei B. Deep learning-based abdominal muscle segmentation on CT images of surgical patient populations. In Medical Imaging 2022: Biomedical Applications in Molecular, Structural, and Functional Imaging 2022 Apr 4 (Vol. 12036, pp. 453-459). SPIE.

    Fei_2022_SPIE_Usamah_CT_Segmentation [PubMed] [PDF] [DOI]
  • Pathour T, Akter N, Dormer JD, Chaudhary S, Fei B, Sirsi S. Identifying unique acoustic signatures from chemically-crosslinked microbubble clusters using deep learning. In Medical Imaging 2022: Ultrasonic Imaging and Tomography 2022 Apr 4 (Vol. 12038, pp. 128-136). SPIE.

    Fei_2022_SPIE_Teja_Ultrasound_DL [PubMed] [PDF] [DOI]
  • Shi T, Shahedi M, Caughlin K, Dormer JD, Ma L, Fei B. Semi-automated three-dimensional segmentation for cardiac CT images using deep learning and randomly distributed points. In Medical Imaging 2022: Image-Guided Procedures, Robotic Interventions, and Modeling 2022 Apr 4 (Vol. 12034, pp. 424-430). SPIE.

    Fei_2022_SPIE_Ted_Cardiac_Segmentation [PubMed] [PDF] [DOI]
  • Bettati P, Dormer JD, Shahedi M, Fei B. An augmented reality-assisted visualization system for potential applications in prostate biopsy. In Medical Imaging 2022: Image-Guided Procedures, Robotic Interventions, and Modeling 2022 Apr 4 (Vol. 12034, pp. 577-582). SPIE.

    Fei_2022_SPIE_Patric_AR_prostate [PubMed] [PDF] [DOI]
  • Tran MH, Ma L, Litter JV, Chen AY, Fei B. Thyroid carcinoma detection on whole histologic slides using hyperspectral imaging and deep learning. In Medical Imaging 2022: Digital and Computational Pathology 2022 Apr 4 (Vol. 12039, pp. 101-111). SPIE.

    Fei_2022_SPIE_Minh_HSI_Histology [PubMed] [PDF] [DOI]
  • Shahedi M, Dormer JD, Do QN, Xi Y, Lewis MA, Herrera CL, Spong CY, Madhuranthakam AJ, Twickler DM, Fei B. Automatic segmentation of uterine cavity and placenta on MR Images using deep learning. In Medical Imaging 2022: Biomedical Applications in Molecular, Structural, and Functional Imaging 2022 Apr 4 (Vol. 12036, pp. 287-293). SPIE.

    Fei_2022_SPIE_Maysam_Placenta_Segmentation [PubMed] [PDF] [DOI]
  • Ma L, Rathgeb A, Tran M, Fei B. Unsupervised super resolution network for hyperspectral histologic imaging. In Medical Imaging 2022: Digital and Computational Pathology 2022 Apr 4 (Vol. 12039, pp. 149-159). SPIE.

    Fei_2022_SPIE_Ling_HSI_Super_Resolution [PubMed] [PDF] [DOI]
  • Leitch K, Shahedi M, Dormer JD, Do QN, Xi Y, Lewis MA, Herrera CL, Spong CY, Madhuranthakam AJ, Twickler DM, Fei B. Placenta accreta spectrum and hysterectomy prediction using MRI radiomic features. In Medical Imaging 2022: Computer-Aided Diagnosis 2022 Apr 4 (Vol. 12033, pp. 394-399). SPIE.

    Fei_2022_SPIE_KaToria_Placenta_Radiomics [PubMed] [PDF] [DOI]
  • Leitch K, Halicek M, Shahedi M, Little JV, Chen AY, Fei B. Detecting aggressive papillary thyroid carcinoma using hyperspectral imaging and radiomic features. In Medical Imaging 2022: Computer-Aided Diagnosis 2022 Apr 4 (Vol. 12033, pp. 537-544). SPIE.

    Fei_2022_SPIE_KaToria_HSI_Thyroid_Radiomics [PubMed] [PDF] [DOI]
  • Huang J, Guo J, Pedrosa I, Fei B. Deep learning-based deformable registration of dynamic contrast enhanced MR images of the kidney. In Medical Imaging 2022: Image-Guided Procedures, Robotic Interventions, and Modeling 2022 Apr 4 (Vol. 12034, pp. 213-222). SPIE.

    Fei_2022_SPIE_Huang_Kidney_Segmentation [PubMed] [PDF] [DOI]
  • Dormer JD, Villordon M, Shahedi M, Do QN, Xi Y, Lewis MA, Madhuranthakam AJ, Herrera CL, Spong CY, Twickler DM, Fei B. CascadeNet for hysterectomy prediction in pregnant women due to placenta accreta spectrum. In Medical Imaging 2022: Image Processing 2022 Apr 4 (Vol. 12032, pp. 156-164). SPIE.

    Fei_2022_SPIE_Dormer_Placenta_Cascade_Net [PubMed] [PDF] [DOI]
  • Ma L, Little JV, Chen AY, Myers L, Sumer BD, Fei B. Automatic detection of head and neck squamous cell carcinoma on histologic slides using hyperspectral microscopic imaging. Journal of Biomedical Optics. 2022 Apr;27(4):046501.

    Fei_2022_Ling_JBO_HSI_Histology [PubMed] [PDF] [DOI]
  • Modir N, Shahedi M, Dormer J, Ma L, Ghaderi M, Sirsi S, Cheng YS, Fei B. LED-based hyperspectral endoscopic imaging. In Optical Biopsy XX: Toward Real-Time Spectroscopic Imaging and Diagnosis 2022 Mar 2 (Vol. 11954, pp. 47-58). SPIE.

    Fei_2022_Photoncis_Naeeme_LED_Endoscope [PubMed] [PDF] [DOI]
  • Ayala L, Isensee F, Wirkert SJ, Vemuri AS, Maier-Hein KH, Fei B, Maier-Hein L. Band selection for oxygenation estimation with multispectral/hyperspectral imaging. Biomedical Optics Express. 2022 Mar 1;13(3):1224-42.

    Fei_2022_BOE_Band_Selection [PubMed] [PDF] [DOI]
  • Reilly CM, Higgins M, Butler J, Esiashvili N, Fei B, Flynn T, Dormer JD, Schreibmann E. The Contribution of Thoracic Radiation Dose Volumes to Subsequent Development of Cardiovascular Disease in Cancer Survivors. Journal of Cardiovascular Nursing. 2022 Mar 24.

    Fei_2021_RadOn_Cancer_Radiomics [PubMed] [PDF] [DOI]
  • Mehta R, Filos A, Baid U, Sako C, McKinley R, Rebsamen M, Dätwyler K, Meier R, Radojewski P, Murugesan GK, Nalawade S, Fei B. QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation-Analysis of Ranking Scores and Benchmarking Results. Journal of Machine Learning for Biomedical Imaging. 2022;1.

    Mehta_2022_MICCAI [PubMed] [PDF]
  • Shahedi M, Dormer JD, Halicek M, Fei B. The effect of image annotation with minimal manual interaction for semiautomatic prostate segmentation in CT images using fully convolutional neural networks. Medical physics. 2022 Feb;49(2):1153-60.

    Fei_2021_MP_Maysam_CT_Segmentation [PDF]
  • Nalawade SS, Fang FY, Yogananda CG, Murugesan GK, Shah BR, Pinho MC, Wagner BC, Xi Y, Mickey B, Patel TR, Fei B. Brain tumor IDH, 1p/19q, and MGMT molecular classification using MRI-based deep learning: an initial study on the effect of motion and motion correction. Journal of Medical Imaging. 2022 Jan;9(1):016001.

    Fei_2022_JMI_Brain_MRI [PubMed] [PDF] [DOI]
  • Selim M, Zhang J, Fei B, Zhang GQ, Chen J. Ct image harmonization for enhancing radiomics studies. In2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) 2021 Dec 9 (pp. 1057-1062). IEEE.

    Fei_2021_IEEE_CTImageHarmonization_Selim [PDF]
  • Selim M, Zhang J, Fei B, Zhang GQ, Ge GY, Chen J. Cross-Vendor CT Image Data Harmonization Using CVH-CT. arXiv preprint arXiv:2110.09693. 2021 Oct 19.

    Fei_2021_CycleGAN_AMIA_2021_final [PubMed] [PDF]
  • Shahedi M, Spong CY, Dormer JD, Do QN, Xi Y, Lewis MA, Herrera C, Madhuranthakam AJ, Twickler DM, Fei B. Deep learning-based segmentation of the placenta and uterus on MR images. Journal of Medical Imaging. 2021 Sep;8(5):054001.

    Fei_2021_JMI_Placenta_DL [PubMed] [PDF] [DOI]
  • Shabestri B, Anastasio MA, Fei B, Leblond F. Special Series Guest Editorial: Artificial Intelligence and Machine Learning in Biomedical Optics. Journal of biomedical optics. 2021 May;26(5).

    Fei_2021_JBO_Editorial_AI [PubMed] [PDF] [DOI]
  • Yogananda CG, Shah BR, Nalawade SS, Murugesan GK, Yu FF, Pinho MC, Wagner BC, Mickey B, Patel TR, Fei B, Madhuranthakam AJ. MRI-based deep-learning method for determining glioma MGMT promoter methylation status. American Journal of Neuroradiology. 2021 May 1;42(5):845-52.

    Fei_2021_GLIOMA [PDF]
  • Petrick N, Akbar S, Cha KH, Nofech-Mozes S, Sahiner B, Gavrielides MA, Kalpathy-Cramer J, Drukker K, Martel AL, Fei B, BreastPathQ Challenge Group FT. SPIE-AAPM-NCI BreastPathQ Challenge: an image analysis challenge for quantitative tumor cellularity assessment in breast cancer histology images following neoadjuvant treatment. Journal of Medical Imaging. 2021 May 1;8(3):034501-.

    Petrick_2021_BreastPathQ [PDF]
  • MacDonald TJ, Liu J, Yu B, Malhotra A, Munson J, Park JC, Wang K, Fei B, Bellamkonda R, Arbiser J. Liposome-imipramine blue inhibits sonic hedgehog medulloblastoma in vivo. Cancers. 2021 Mar 11;13(6):1220.

    MacDonald_2021_Cancers_Sonic_The_Hedgehog [PubMed] [PDF] [DOI]
  • Modir N, Shahedi M, Dormer J, Fei B. Development of a real-time spectral imaging system using in-site micro-LED-based illumination and high-speed micro-camera for endoscopic applications. In High-Speed Biomedical Imaging and Spectroscopy VI 2021 Mar 5 (Vol. 11654, p. 1165417). International Society for Optics and Photonics.

    Fei_2021_Modir_LED_HSI [PubMed] [PDF] [DOI]
  • Zhou X, Ma L, Brown W, Little JV, Chen AY, Myers LL, Sumer BD, Fei B. Automatic detection of head and neck squamous cell carcinoma on pathologic slides using polarized hyperspectral imaging and machine learning. In Medical Imaging 2021: Digital Pathology 2021 Feb 15 (Vol. 11603, p. 116030Q). International Society for Optics and Photonics.

    Fei_2021_Zhou_HSI_HNC [PDF]
  • Yociss M, Fei B. GPU-based simulation of echocardiography volumes using quantitative fiber-angle-to-backscatter measurements. In Society of Photo-Optical Instrumentation Engineers (SPIE) Conference Series 2021 Feb (Vol. 11602, p. 116020U).

    Fei_2021_Yociss_GPU_US [PubMed] [PDF] [DOI]
  • Xi Y, Shahedi M, Do QN, Dormer J, Lewis MA, Fei B, Spong CY, Madhuranthakam AJ, Twickler DM. Assessing reproducibility in magnetic resonance (MR) radiomics features between deep-learning segmented and expert manual segmented data and evaluating their diagnostic performance in pregnant women with suspected placenta accreta spectrum (PAS). In Medical Imaging 2021: Computer-Aided Diagnosis 2021 Feb 15 (Vol. 11597, p. 115972P). International Society for Optics and Photonics.

    Fei_2021_Xi_Placenta_MRI [PubMed] [PDF] [DOI]
  • Tao L, Ma L, Xie M, Liu X, Tian Z, Fei B. Automatic segmentation of the prostate on MR images based on anatomy and deep learning. In Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling 2021 Feb 15 (Vol. 11598, p. 115981N). International Society for Optics and Photonics.

    Fei_2021_Prostate_MRI [PubMed] [PDF] [DOI]
  • Ma L, Shahedi M, Shi T, Halicek M, Little JV, Chen AY, Myers LL, Sumer BD, Fei B. Pixel-level tumor margin assessment of surgical specimen in hyperspectral imaging and deep learning classification. In Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling 2021 Feb 15 (Vol. 11598, p. 1159811). International Society for Optics and Photonics.

    Fei_2021_Ma_Margin_HSI_Deep_Learning [PubMed] [PDF] [DOI]
  • Ma L, Zhou X, Little JV, Chen AY, Myers LL, Sumer BD, Fei B. Hyperspectral microscopic imaging for the detection of head and neck squamous cell carcinoma on histologic slides. In Medical Imaging 2021: Digital Pathology 2021 Feb 15 (Vol. 11603, p. 116030P). International Society for Optics and Photonics.

    Fei_2021_Ma_HSI_Histology_HNC [PubMed] [PDF] [DOI]
  • Wan C, Ma L, Liu X, Fei B. Computer-aided classification of lung nodules on CT images with expert knowledge. In Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling 2021 Feb 15 (Vol. 11598, p. 115982K). International Society for Optics and Photonics.

    Fei_2021_Lung_CT [PubMed] [PDF] [DOI]
  • Edwards K, Halicek M, Little JV, Chen AY, Fei B. Multiparametric radiomics for predicting the aggressiveness of papillary thyroid carcinoma using hyperspectral images. In Medical Imaging 2021: Computer-Aided Diagnosis 2021 Feb 15 (Vol. 11597, p. 1159728). International Society for Optics and Photonics.

    Fei_2021_Edwards_Radiomics_HSI [PubMed] [PDF] [DOI]
  • Caughlin K, Shahedi M, Shoag JE, Barbieri C, Margolis D, Fei B. Three-dimensional prostate CT segmentation through fine-tuning of a pre-trained neural network using no reference labeling. InMedical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling 2021 Feb 15 (Vol. 11598, p. 115980L). International Society for Optics and Photonics.

    Fei_2021_Caughlin_Prostate_CT_Segmentation [PubMed] [PDF] [DOI]
  • Bettati P, Dormer JD, Young J, Shahedi M, Fei B. Virtual reality assisted cardiac catheterization. In Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling 2021 Feb 15 (Vol. 11598, p. 115982D). International Society for Optics and Photonics.

    Fei_2021_Battati_VR_Cardiac [PubMed] [PDF] [DOI]
  • Ma L, Fei B. Comprehensive review of surgical microscopes: technology development and medical applications. Journal of biomedical optics. 2021 Jan;26(1):010901.

    Fei_2021_Ling_Surgical_Microscope_Review [PubMed] [PDF] [DOI]
  • Yogananda CG, Shah BR, Yu FF, Pinho MC, Nalawade SS, Murugesan GK, Wagner BC, Mickey B, Patel TR, Fei BW, Madhuranthakam AJ. A novel fully automated MRI-based deep-learning method for classification of 1p/19q co-deletion status in brain gliomas. Neuro-oncology advances. 2020 Jan; 2(1):vdaa066.
    Yogananda_2020_NeuroOnc_1 [PubMed] [PDF] [DOI]
  • Yogananda CG, Shah BR, Vejdani-Jahromi M, Nalawade SS, Murugesan GK, Yu FF, Pinho MC, Wagner BC, Emblem KE, Bjørnerud A, Fei BW (Corresponding author). A fully automated deep learning network for brain tumor segmentation. Tomography. 2020 Jun; 6(2):186.
    Yogananda_2020_Tomography [PubMed] [PDF] [DOI]
  • Tian Z, Li X, Zheng Y, Chen Z, Shi Z, Liu L, Fei B. Graph‐convolutional‐network‐based interactive prostate segmentation in MR images. Medical physics. 2020 Sep;47(9):4164-76.

    Fei_2020_Tian_MP_Prostate_Segmentation [PubMed] [PDF] [DOI]
  • Ortega S, Halicek M, Fabelo H, Camacho R, Plaza MD, Godtliebsen F, M Callicó G, Fei BW (Corresponding author). Hyperspectral imaging for the detection of glioblastoma tumor cells in H&E slides using convolutional neural networks. Sensors; 20(7):1911.
    Ortega_2020_Sensors [PubMed] [PDF] [DOI]
  • Yogananda CG, Shah BR, Nalawade S, Murugesan GK, Frank FY, Pinho MC, Wagner BC, Mickey B, Patel TR, Fei BW, Madhuranthakam AJ, Maldjian JA. MRI-based deep learning method for determining methylation status of the 06 methylguanne DNA methyltransferase promoter outperforms tissue based methods in brain gliomas. bioRxiv 2020.

    Yogananda_2020_bioRxiv [PubMed] [PDF]
  • Nalawade S, Fang FY, Yogananda CG, Murugesan GK, Shah BR, Pinho MC, Wagner BC, Mickey B, Patel TR, Fei BW, Madhuranthakam AJ, Maldjian JA. Brain tumor IDH, 1p/19q, and MGMT molecular classification using MRI-based deep learning: effect of motion and motion correction. bioRxiv 2020.
    Nalawade_2020_bioRxiv [PDF]
  • Zhou X, Ma L, Halicek M, Dormer J, Fei BW (Corresponding author). Development of a new polarized hyperspectral imaging microscope. Imaging, Therapeutics, and Advanced Technology in Head and Neck Surgery and Otolaryngology 2020; 11213(1121308). International Society for Optics and Photonics,
    Zhou_2020_Otolaryngology [PubMed] [PDF] [DOI]
  • Zhou X, Dormer JD, Fei BW. Development of a polarized hyperspectral microscope for cardiac fiber orientation imaging. Diagnostic and Therapeutic Applications of Light in Cardiology 2020; 11215(112150V). International Society for Optics and Photonics,
    Zhou_2020_Cardiology [PubMed] [PDF] [DOI]
  • Tran CT, Halicek M, Dormer JD, Tandon A, Hussain T, Fei BW (Corresponding author). Fully automated segmentation of the right ventricle in patients with repaired Tetralogy of Fallot using U-Net. Medical Imaging 2020: Biomedical Applications in Molecular, Structural, and Functional Imaging; 11317(113171M). International Society for Optics and Photonics,

    Tran_2020_SPIE [PDF] [DOI]
  • Ma L, Halicek M, Fei BW. In vivo cancer detection in animal model using hyperspectral image classification with wavelet feature extraction. Medical Imaging 2020: Biomedical Applications in Molecular, Structural, and Functional Imaging; 11317(113171C). International Society for Optics and Photonics,
    Ma_2020_SPIE_2 [PubMed] [PDF] [DOI]
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