Publications
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Nalawade SS, Fang FY, Yogananda CG, Murugesan GK, Shah BR, Pinho MC, Wagner BC, Xi Y, Mickey B, Patel TR, Fei B. Brain tumor IDH, 1p/19q, and MGMT molecular classification using MRI-based deep learning: an initial study on the effect of motion and motion correction. Journal of Medical Imaging. 2022 Jan;9(1):016001.
Fei_2022_JMI_Brain_MRI [PubMed] [PDF] [DOI] -
Selim M, Zhang J, Fei B, Zhang GQ, Chen J. Ct image harmonization for enhancing radiomics studies. In2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) 2021 Dec 9 (pp. 1057-1062). IEEE.
Fei_2021_IEEE_CTImageHarmonization_Selim [PDF] -
Selim M, Zhang J, Fei B, Zhang GQ, Ge GY, Chen J. Cross-Vendor CT Image Data Harmonization Using CVH-CT. arXiv preprint arXiv:2110.09693. 2021 Oct 19.
Fei_2021_CycleGAN_AMIA_2021_final [PubMed] [PDF] -
Shahedi M, Spong CY, Dormer JD, Do QN, Xi Y, Lewis MA, Herrera C, Madhuranthakam AJ, Twickler DM, Fei B. Deep learning-based segmentation of the placenta and uterus on MR images. Journal of Medical Imaging. 2021 Sep;8(5):054001.
Fei_2021_JMI_Placenta_DL [PubMed] [PDF] [DOI] -
Shabestri B, Anastasio MA, Fei B, Leblond F. Special Series Guest Editorial: Artificial Intelligence and Machine Learning in Biomedical Optics. Journal of biomedical optics. 2021 May;26(5).
Fei_2021_JBO_Editorial_AI [PubMed] [PDF] [DOI] -
Yogananda CG, Shah BR, Nalawade SS, Murugesan GK, Yu FF, Pinho MC, Wagner BC, Mickey B, Patel TR, Fei B, Madhuranthakam AJ. MRI-based deep-learning method for determining glioma MGMT promoter methylation status. American Journal of Neuroradiology. 2021 May 1;42(5):845-52.
Fei_2021_GLIOMA [PDF] -
Petrick N, Akbar S, Cha KH, Nofech-Mozes S, Sahiner B, Gavrielides MA, Kalpathy-Cramer J, Drukker K, Martel AL, Fei B, BreastPathQ Challenge Group FT. SPIE-AAPM-NCI BreastPathQ Challenge: an image analysis challenge for quantitative tumor cellularity assessment in breast cancer histology images following neoadjuvant treatment. Journal of Medical Imaging. 2021 May 1;8(3):034501-.
Petrick_2021_BreastPathQ [PDF] -
MacDonald TJ, Liu J, Yu B, Malhotra A, Munson J, Park JC, Wang K, Fei B, Bellamkonda R, Arbiser J. Liposome-imipramine blue inhibits sonic hedgehog medulloblastoma in vivo. Cancers. 2021 Mar 11;13(6):1220.
MacDonald_2021_Cancers_Sonic_The_Hedgehog [PubMed] [PDF] [DOI] -
Modir N, Shahedi M, Dormer J, Fei B. Development of a real-time spectral imaging system using in-site micro-LED-based illumination and high-speed micro-camera for endoscopic applications. In High-Speed Biomedical Imaging and Spectroscopy VI 2021 Mar 5 (Vol. 11654, p. 1165417). International Society for Optics and Photonics.
Fei_2021_Modir_LED_HSI [PubMed] [PDF] [DOI] -
Zhou X, Ma L, Brown W, Little JV, Chen AY, Myers LL, Sumer BD, Fei B. Automatic detection of head and neck squamous cell carcinoma on pathologic slides using polarized hyperspectral imaging and machine learning. In Medical Imaging 2021: Digital Pathology 2021 Feb 15 (Vol. 11603, p. 116030Q). International Society for Optics and Photonics.
Fei_2021_Zhou_HSI_HNC [PDF] -
Yociss M, Fei B. GPU-based simulation of echocardiography volumes using quantitative fiber-angle-to-backscatter measurements. In Society of Photo-Optical Instrumentation Engineers (SPIE) Conference Series 2021 Feb (Vol. 11602, p. 116020U).
Fei_2021_Yociss_GPU_US [PubMed] [PDF] [DOI] -
Xi Y, Shahedi M, Do QN, Dormer J, Lewis MA, Fei B, Spong CY, Madhuranthakam AJ, Twickler DM. Assessing reproducibility in magnetic resonance (MR) radiomics features between deep-learning segmented and expert manual segmented data and evaluating their diagnostic performance in pregnant women with suspected placenta accreta spectrum (PAS). In Medical Imaging 2021: Computer-Aided Diagnosis 2021 Feb 15 (Vol. 11597, p. 115972P). International Society for Optics and Photonics.
Fei_2021_Xi_Placenta_MRI [PubMed] [PDF] [DOI] -
Tao L, Ma L, Xie M, Liu X, Tian Z, Fei B. Automatic segmentation of the prostate on MR images based on anatomy and deep learning. In Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling 2021 Feb 15 (Vol. 11598, p. 115981N). International Society for Optics and Photonics.
Fei_2021_Prostate_MRI [PubMed] [PDF] [DOI] -
Ma L, Shahedi M, Shi T, Halicek M, Little JV, Chen AY, Myers LL, Sumer BD, Fei B. Pixel-level tumor margin assessment of surgical specimen in hyperspectral imaging and deep learning classification. In Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling 2021 Feb 15 (Vol. 11598, p. 1159811). International Society for Optics and Photonics.
Fei_2021_Ma_Margin_HSI_Deep_Learning [PubMed] [PDF] [DOI] -
Ma L, Zhou X, Little JV, Chen AY, Myers LL, Sumer BD, Fei B. Hyperspectral microscopic imaging for the detection of head and neck squamous cell carcinoma on histologic slides. In Medical Imaging 2021: Digital Pathology 2021 Feb 15 (Vol. 11603, p. 116030P). International Society for Optics and Photonics.
Fei_2021_Ma_HSI_Histology_HNC [PubMed] [PDF] [DOI] -
Wan C, Ma L, Liu X, Fei B. Computer-aided classification of lung nodules on CT images with expert knowledge. In Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling 2021 Feb 15 (Vol. 11598, p. 115982K). International Society for Optics and Photonics.
Fei_2021_Lung_CT [PubMed] [PDF] [DOI] -
Edwards K, Halicek M, Little JV, Chen AY, Fei B. Multiparametric radiomics for predicting the aggressiveness of papillary thyroid carcinoma using hyperspectral images. In Medical Imaging 2021: Computer-Aided Diagnosis 2021 Feb 15 (Vol. 11597, p. 1159728). International Society for Optics and Photonics.
Fei_2021_Edwards_Radiomics_HSI [PubMed] [PDF] [DOI] -
Caughlin K, Shahedi M, Shoag JE, Barbieri C, Margolis D, Fei B. Three-dimensional prostate CT segmentation through fine-tuning of a pre-trained neural network using no reference labeling. InMedical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling 2021 Feb 15 (Vol. 11598, p. 115980L). International Society for Optics and Photonics.
Fei_2021_Caughlin_Prostate_CT_Segmentation [PubMed] [PDF] [DOI] -
Bettati P, Dormer JD, Young J, Shahedi M, Fei B. Virtual reality assisted cardiac catheterization. In Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling 2021 Feb 15 (Vol. 11598, p. 115982D). International Society for Optics and Photonics.
Fei_2021_Battati_VR_Cardiac [PubMed] [PDF] [DOI] -
Ma L, Fei B. Comprehensive review of surgical microscopes: technology development and medical applications. Journal of biomedical optics. 2021 Jan;26(1):010901.
Fei_2021_Ling_Surgical_Microscope_Review [PubMed] [PDF] [DOI]